PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03404g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 745aa MW: 82901.7 Da PI: 6.9516

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03404g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.9	3.9e-18	158	258	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g+ W +++++ +++s++yvl+ G ++ +L++gD+v+ Niben101Scf03404g01010.1 158 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVT 241 99************************555567778***********99899999999.*************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F++++ e++l+++++++ Niben101Scf03404g01010.1 242 FSRMD-PEGKLLMGFRKA 258 876.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.5E-29	150	263	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.09E-18	155	257	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.12E-21	156	257	No hit	No description
SMART	SM01019	4.2E-19	158	259	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.011	158	259	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-15	158	258	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.286	422	472	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.9E-10	427	469	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MEEAFHPAGE SGCTFSSNLC QASAESSKNV KLDSYNGYIG VNEIHGSQVQ TNLSIALSAP 60 SPNTKPFPAT VDEGDLNKRI SSLQQGSRSR SLLPKPPKST SAVRSETNAG IISQIRVARP 120 PVEGRIKNQL LPRYWPRITD QELQQISGDS NSTIIPLFEK VLSASDAGRI GRLVLPKACA 180 EAYFPPISQP EGLPLRIQDV KGKDWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV 240 TFSRMDPEGK LLMGFRKAST VNSTQETRLS AIPKSVFSTE PTSFSAMPEN LPLMSGYSGL 300 LQSFKGSRES SVNLSSKNFN NGDFSWYLTE KNEGRNADGT FSPSMPVSDR KRSRNIGSKS 360 KRLLIDSDEA LELKLSWEEL QDMLRPPLSI QPTTVTIEDH EFEEYEQPPV LGKRSIFTVR 420 SSGEQEQWAQ CDNCFKWRKL PADYLLPPQW TCQDNSFDHS RCSCSVPDDL TPRELEYLLK 480 MDKDLKKQRS AAGQRTMHAY DSSDLDSQAN GTGVAGDARE PGATSVATTT KHPRHRPGCS 540 CIVCIQPPSG KGKHNPTCTC NVCLTVKRRF KTLMMRKKKR QSEREAEIGQ RNQLMWSSKE 600 ETEVDSFSRQ VKPEVYPSDK ERSVSETLPR GHSSNQLQKL PETSKSQLDL NCHPNREDTG 660 SSHLSMMSLL QQASLPLETY LRQNGLTSLV SEQQGSSGSQ GLPPDTRESE VHIHEDQCFA 720 SATQEQEQEG AKENSEPDQS GKDNS

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MEEAFHPAGE SGCTFSSNLC QASAESSKNV KLDSYNGYIG VNEIHGSQVQ TNLSIALSAP  60
SPNTKPFPAT VDEGDLNKRI SSLQQGSRSR SLLPKPPKST SAVRSETNAG IISQIRVARP  120
PVEGRIKNQL LPRYWPRITD QELQQISGDS NSTIIPLFEK VLSASDAGRI GRLVLPKACA  180
EAYFPPISQP EGLPLRIQDV KGKDWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV  240
TFSRMDPEGK LLMGFRKAST VNSTQETRLS AIPKSVFSTE PTSFSAMPEN LPLMSGYSGL  300
LQSFKGSRES SVNLSSKNFN NGDFSWYLTE KNEGRNADGT FSPSMPVSDR KRSRNIGSKS  360
KRLLIDSDEA LELKLSWEEL QDMLRPPLSI QPTTVTIEDH EFEEYEQPPV LGKRSIFTVR  420
SSGEQEQWAQ CDNCFKWRKL PADYLLPPQW TCQDNSFDHS RCSCSVPDDL TPRELEYLLK  480
MDKDLKKQRS AAGQRTMHAY DSSDLDSQAN GTGVAGDARE PGATSVATTT KHPRHRPGCS  540
CIVCIQPPSG KGKHNPTCTC NVCLTVKRRF KTLMMRKKKR QSEREAEIGQ RNQLMWSSKE  600
ETEVDSFSRQ VKPEVYPSDK ERSVSETLPR GHSSNQLQKL PETSKSQLDL NCHPNREDTG  660
SSHLSMMSLL QQASLPLETY LRQNGLTSLV SEQQGSSGSQ GLPPDTRESE VHIHEDQCFA  720
SATQEQEQEG AKENSEPDQS GKDNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	9e-69	136	265	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	566	577	KRRFKTLMMRKK
2	566	579	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257107.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
Refseq	XP_019257108.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1J6ILL2	0.0	A0A1J6ILL2_NICAT; B3 domain-containing protein
STRING	XP_009768196.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]