PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03412g01020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 137aa MW: 15322.7 Da PI: 8.2313

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03412g01020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	11	106	6	101
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +lrr+CakdC++apyf +++p++fa+vhk+FGasn++k+l+++p ++r da+ss+vyeA+ r+rdPvyG+vg i lq+q++ql Niben101Scf03412g01020.1 11 HLLRRRCAKDCIFAPYFSSDDPHQFAIVHKVFGASNISKMLQEVPVNKRADAVSSIVYEANTRMRDPVYGCVGAIYYLQNQVSQL 95 679******************************************************************************** PP DUF260 91 kaelallkeel 101 + +lal+++e+ Niben101Scf03412g01020.1 96 QMQLALAQAEI 106 ****99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.856	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-39	12	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MGATGNSHVL HLLRRRCAKD CIFAPYFSSD DPHQFAIVHK VFGASNISKM LQEVPVNKRA 60 DAVSSIVYEA NTRMRDPVYG CVGAIYYLQN QVSQLQMQLA LAQAEILCIQ MQSSQHHQPV 120 NLLPMSPPIH DQISSCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-38	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-38	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604707.1	2e-76	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_009764881.1	2e-76	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_016435041.1	2e-76	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_016437290.1	2e-76	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	7e-62	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S3X5C4	5e-75	A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
TrEMBL	A0A1S3XBI3	4e-75	A0A1S3XBI3_TOBAC; LOB domain-containing protein 12-like
TrEMBL	A0A1U7VIX6	4e-75	A0A1U7VIX6_NICSY; LOB domain-containing protein 12-like
STRING	XP_009764881.1	6e-76	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-56	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]