PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03419g10007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 599aa    MW: 64786.6 Da    PI: 7.7568
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03419g10007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24213257145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Niben101Scf03419g10007.1 213 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 257
                               79****************************************985 PP
2QLQ62.41.2e-21145181137
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k
  Niben101Scf03419g10007.1 145 GPFTPSQWMELEHQALIYKYITANVPIPPYLLSPIRK 181
                               59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.4E-13145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.455146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-15146180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663213257IPR014977WRC domain
PfamPF088797.1E-21214256IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDFGVVGSLD SGGVICSDNT SNMFTTTAAA ASFETKQKWY GSTGFHKNET SSTEDDWNNK  60
DTKLAKTSDD FSSSKAAATV LFQQQLRSNC PNSQQMLSFS SPNSQNVTMP YYHYTSSPFT  120
RNSSGCGSGG MNAGNMHGVI AGVKGPFTPS QWMELEHQAL IYKYITANVP IPPYLLSPIR  180
KALESAGFTT FAGLRPNALG WGAFHIGFSN SNDPEPGRCR RTDGKKWRCS RDAVADQKYC  240
ERHMNRGRHR SRKPVEGQTG ATSAKLMNVS SSASASTSAA LNPGGAASNT LPLSHPQLSN  300
LPLAVTNPST TSPHLERNYT PKENFGERYS DTEGLTVVSS SEKVVSSSEK ESQYSIQKEQ  360
NLYGVTSRVE FGLVCADSLI NPLNKNSSLV NCRGYGNSEE SKSQHHPLRL FMDDWPKNQS  420
DQSTVSWPDI DLQSDRTQLS ISIPVVTSDF MSSTSSPSND KLRTSPQYRP SQEHETTTQM  480
GLGIGTIVSD HNQRQGNWIP ITWETSMGGP LGEVLHSTNN SSGDCKNKSA ALNLMTEGWD  540
RSPRMGSSPT GVLQKSSFGS LSNSSAGSSP RAENSKTNEG SSLCNGLGTT LMNPILPAM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438848.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1S3XG670.0A0A1S3XG67_TOBAC; growth-regulating factor 1-like
STRINGXP_009626682.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-70growth-regulating factor 2