PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03422g04024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 220aa    MW: 23522.3 Da    PI: 8.7528
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03422g04024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.91.9e-35137208172
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT----- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhner 72 
                               +CqvegC+ +ls+akey+ +h+vC+ hsk+p+v+++g+  rfCqqCsrfh+lsefDe+krsC rrL++hn+r
  Niben101Scf03422g04024.1 137 RCQVEGCNLNLSSAKEYYWKHRVCDSHSKCPKVTIAGVACRFCQQCSRFHSLSEFDEKKRSCHRRLSDHNAR 208
                               6*********************************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-31131199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.889135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-33136211IPR004333Transcription factor, SBP-box
PfamPF031103.2E-28138208IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MFGSKAAKSP KELQLTDWGV EEDGELDAGS FNLSSGGSGS GTGGYVSDVG RGSSIKSSIS  60
ASTDSSPKEG LKASNFSFDG SPEDLSSVEP LVGLKLGKRI FETIGGAKIS SFPEKPVSSA  120
AAAKKTKSST QNAPTPRCQV EGCNLNLSSA KEYYWKHRVC DSHSKCPKVT IAGVACRFCQ  180
QCSRFHSLSE FDEKKRSCHR RLSDHNARPV QLGKDFFIVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-221382081181squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226025.11e-109PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_019226026.11e-109PREDICTED: squamosa promoter-binding-like protein 3
SwissprotA2X0Q65e-43SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z85e-43SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A314KU741e-108A0A314KU74_NICAT; Squamosa promoter-binding-like protein 3
STRINGXP_009766987.11e-100(Nicotiana sylvestris)
STRINGXP_009620616.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-39squamosa promoter binding protein-like 2