PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03438g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 244aa    MW: 28156.7 Da    PI: 5.5739
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03438g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.2e-34231142102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+k+ +++         weF+++ F
  Niben101Scf03438g02001.1  23 FLLKTYMMVEDPATDDVISWNSDGTAFIVRQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKIATSQ---------WEFSNDMF 98 
                               9****************************************************************998.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +kg+k ll++i+r+k 
  Niben101Scf03438g02001.1  99 RKGEKGLLCDIRRRKA 114
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3516107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.84E-3219112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5119112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3023112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGELDQCEST LLEYVRKSST PPFLLKTYMM VEDPATDDVI SWNSDGTAFI VRQPAEFARD  60
LLPTLFKHCN FSSFVRQLNT YGFRKIATSQ WEFSNDMFRK GEKGLLCDIR RRKAWKNKQQ  120
TNKNINIGQN NAANKKERDD DQRSSSSTSS SSSEYNSLID ENKRLKMENG VLSSELSTIN  180
KKCKELIDIV AMLAENSEEE EEGQQDERPM LFGVRLEVQE EMEKKRKRAE FTQTVGVFLS  240
QLCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-201811215120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434894.11e-159PREDICTED: heat stress transcription factor B-3-like
SwissprotO222302e-64HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3X4P11e-157A0A1S3X4P1_TOBAC; heat stress transcription factor B-3-like
STRINGXP_009775017.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-61heat shock transcription factor B3