PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03438g06002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 197aa    MW: 22906.2 Da    PI: 9.9518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03438g06002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.94.8e-24141373128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeekew.yfFskrdkkyatgkrknr.atksgyW 83 
                               +GfrF+Ptdeel+ +yL k v+ k+ ++ ++i+  d+y   +Pwd+  +++ ++++++ yfF+k ++++a g+r +r  +  g W
  Niben101Scf03438g06002.1  14 VGFRFRPTDEELI-RYLLKFVSCKNYSC-DHIRVEDLYGNkKPWDIFeSNFLGDDTKLnYFFTKLKRTKAGGSRFSRrLIGGGCW 96 
                               7************.9**********999.88**99*996549****6345555666556***************9997999**** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k   k+k+v++ +++lvg kk++ + ++     ++  W m+ey+l
  Niben101Scf03438g06002.1  97 KGLDKHKSVFK-GSKLVGSKKSFRYLEK---GIKNFVWNMKEYSL 137
                               **********9.9************943...334689******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-2610164IPR003441NAC domain
PROSITE profilePS5100526.07812164IPR003441NAC domain
PfamPF023653.0E-1514137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTSSSHNYGP NEVVGFRFRP TDEELIRYLL KFVSCKNYSC DHIRVEDLYG NKKPWDIFES  60
NFLGDDTKLN YFFTKLKRTK AGGSRFSRRL IGGGCWKGLD KHKSVFKGSK LVGSKKSFRY  120
LEKGIKNFVW NMKEYSLNDN ILKVLRQRNI IQHEDYVLCC IKRKSVHAND HKELGDDMEI  180
ADSGNNMVQG FNSVIKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238850.11e-122PREDICTED: NAC domain-containing protein 68-like
RefseqXP_019244620.11e-122PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A1J6KHW81e-121A0A1J6KHW8_NICAT; Nac domain-containing protein 78
STRINGXP_009767422.11e-118(Nicotiana sylvestris)
STRINGXP_009798779.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-21NAC domain containing protein 2