PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03438g06011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 158aa    MW: 18213.7 Da    PI: 8.989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03438g06011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM21.65.8e-07449375128
                       NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +r +  g Wk   k+k+v++ +++lvg kk++ + ++     ++  W m+ey+l
  Niben101Scf03438g06011.1  44 RRLIGGGCWKGLDKHKSVFK-GSKLVGSKKSFRYLEK---GIKNFVWNMKEYSL 93 
                               678899*************9.9************943...334689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.8171120IPR003441NAC domain
SuperFamilySSF1019418.24E-1611120IPR003441NAC domain
PfamPF023652.3E-91593IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTISSHNCGP NEALGFRFRP TDEEPIRYLL KFVSCKSFSF DHIRRLIGGG CWKGLDKHKS  60
VFKGSKLVGS KKSFRYLEKG IKNFVWNMKE YSLNDNILKV LRQRNIIQHE DYVLCCIKRK  120
SVHANDHKEL GDDMEIADSG NNVVDVLNTM LSPTQEXE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767422.11e-88PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1U7VH592e-87A0A1U7VH59_NICSY; NAC domain-containing protein 78-like
STRINGXP_009767422.14e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-07NAC-like, activated by AP3/PI