PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03444g04022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 243aa    MW: 28032.4 Da    PI: 5.5518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03444g04022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-071447135
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                              rg+WT eEd +lv+ +   G  +W+tI++  g  +
  Niben101Scf03444g04022.1 14 RGPWTIEEDHKLVHFILNNGIQCWRTIPKLAG-AL 47
                              89***************************999.44 PP
2Myb_DNA-binding47.93.1e-154787446
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               ++ E+++++++++++G++ W++Ia+++  gRt++++k++w++
  Niben101Scf03444g04022.1 47 LSEAEEDQIIELHARFGNR-WSKIASHFS-GRTDNEIKNHWNT 87
                              5899***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-8543IPR009057Homeodomain-like
SuperFamilySSF466894.21E-181185IPR009057Homeodomain-like
PROSITE profilePS5129420.733993IPR017930Myb domain
SMARTSM007176.3E-134391IPR001005SANT/Myb domain
PfamPF002498.1E-144687IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-194694IPR009057Homeodomain-like
CDDcd001671.66E-104887No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTI PKLAGALSEA EEDQIIELHA  60
RFGNRWSKIA SHFSGRTDNE IKNHWNTRIK KKLKQVGIDP LTHRPIDHEK YQQEPDDTIM  120
ELKLPIHHHK TETYDKSNEA ENCTENATDF SVSNIAYHNM LSENFDVDLW NKSCKTLSNC  180
YSPTLSLEAE ETIKFSTVSA VIESSSNIAP AEEQDSLQQW MDSIFSCAVN QLEEDLVFLR  240
KYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1512935108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763213.11e-167PREDICTED: protein ODORANT1-like
RefseqXP_016498209.11e-167PREDICTED: protein ODORANT1-like
TrEMBLA0A1S4CB721e-166A0A1S4CB72_TOBAC; protein ODORANT1-like
TrEMBLA0A1U7VA231e-166A0A1U7VA23_NICSY; protein ODORANT1-like
STRINGXP_009763213.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-60myb domain protein 40