PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03455g01009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 291aa MW: 32764.7 Da PI: 5.7022

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03455g01009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.3e-06	231	275	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n E++RR ++++ L+ ++P + +++ +++L +Av+Y+ksL Niben101Scf03455g01009.1 231 TSNCSEKKRR-KLKKMVKALKGIVPGS-----SRMNTVTVLDEAVRYLKSL 275 5688999998.7***********97.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.944	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-9	228	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-8	230	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.56E-9	230	280	No hit	No description
SMART	SM00353	7.3E-8	233	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
LQISIFHLVI FLETKVHLEG ENRYRAVKEA GEIKMHAGSV AYCQLMLVCQ SNYEFSPQKP 60 FFSPEDQASG GNLFDIPSPS VFGTMALPTG FNPSVPVHGF EFQSSEACPK NFIIFDQTDY 120 RSQIMFHPAM ASKFPYPDLN FNATYFQDGM ERKVANNENT EVSSYLKEDS ADINALLSFE 180 EEEHEEYDDE EVSTARTDAN YGNSSPESYS NYDCQSKKSR TSSFRKSSGS TSNCSEKKRR 240 KLKKMVKALK GIVPGSSRMN TVTVLDEAVR YLKSLKVEVQ KLGVDNLKTF A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	240	KKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226808.1	1e-164	PREDICTED: transcription factor bHLH144
Swissprot	Q9ASX9	2e-33	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A2G2XEA8	1e-166	A0A2G2XEA8_CAPBA; Uncharacterized protein
STRING	XP_009801820.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-29	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]