PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03469g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 879aa    MW: 95034.7 Da    PI: 6.3698
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03469g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR31.24.2e-105916161540
                       TCR  15 kkYCeCfaagkkCseeCkCedCkNke 40 
                               + YCeCfaag++C e C C+dC+Nk 
  Niben101Scf03469g01004.1 591 RSYCECFAAGVYCVEPCACQDCFNKP 616
                               57**********************96 PP
2TCR50.93e-16664702139
                       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                               ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Niben101Scf03469g01004.1 664 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 702
                               589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.76583704IPR005172CRC domain
SMARTSM011140.0013591618IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-6592615IPR005172CRC domain
SMARTSM011147.5E-18664705IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.8E-12666702IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
VASHQHNNSC GGNIFSLKAK EGVVGYKCPH SFISTRKSTP FFISHSILKF PLLIEFLSLS  60
LLLRGKLCVS SVCFFLCVCA SDRVMSTEEE KVSLERENVV EKGSEELVEG RKCVKGGGVK  120
GGVVVVMDTP KRKKNQIATP ISKFEESPIF NFLNNLSPIK LDKSANFTQT LNSLSFASIP  180
SVFTSPHVSS IRESRFLRRH LLSDPSKPEF ASDNGVKVDT DEGMLDAVNN SIEPKETFGC  240
GISGGEAPAS PSHECSRLAV ELARSLNYEC SSPSTLPTGG IRGKSLPEFA GTSVTYVPLV  300
QEISGKGLLR CEVNMDGTNE IVQDKEEASG CDWESLITDA TDLLIFDSPG DPEAFTKASG  360
PNFRTFEYVS NEMQNVQHFC QVSTSECGGD GSETEKPSAQ PGEESQLKEY ADAENTKPDA  420
SLINDSMCVG QSEKNDNEMV SALYRGMRRR CLVFEMVGPR RKHIDEGSGS SAAQEADGNA  480
ASNDKQLVPS KTVNEYPRCT LPGIGLHLNS LTASSKDGKV VKQEANASGK QLVIASGSSI  540
NLHSSVTGQE SLVKSLPETS RGGEIVPFEN SLPLMEDVFQ APGYASIGNW RSYCECFAAG  600
VYCVEPCACQ DCFNKPIHED TVLATRKQIE SRNPLAFAPK VIRTTDSLSE TTGDDSSKTP  660
ASARHKRGCN CKKSGCLKKY CECYQGGVGC SINCRCEGCK NAFGRKDGTD GDAEEEETDA  720
CEKSIVDRTS HKNLVQSDIE QNPDSAPPAT PLSFGRPPMQ LPFSLKNKPP RSSFLSIGSS  780
SGGIYAAGQG VGRPNFFQPQ PKFDKPFESV QVQEDEMPEI LQGTKSPVSG IKTASPNRKR  840
VSPPHCNYGN SHSHSPGRRS SRKLILQSIP SFPSLTPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1261870149120Protein lin-54 homolog
5fd3_B2e-1261870149120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770245.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A1U7W7L20.0A0A1U7W7L2_NICSY; protein tesmin/TSO1-like CXC 2 isoform X2
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-125TESMIN/TSO1-like CXC 2