PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03471g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 428aa MW: 46755.5 Da PI: 9.127

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03471g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	195	217	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H H Niben101Scf03471g02003.1 195 TCHKCGEQFGKWEALESHHLFkH 217 7*****************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	196	217	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.01E-20	219	427	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.5E-7	232	407	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKAGGGGGG GGSRSVCSRS 60 IANLKDVIHG SKRHLEKPPS CSPRSIGSSE FLNPITHEVI LSNSRCELKI TSFNGFQESS 120 PSSTFVGTLR PGTPGPGGNP TMHYFNSGCR NSVATPTRRS ASFLVDKEGS ANSFPCKNTR 180 HSLDNDVNGT SSGVTCHKCG EQFGKWEALE SHHLFKHAVS ELLEGDSSRK IVEIICRSSW 240 LKSESHVGRI ERILKVHNTQ KTLACFEEYR EMVKIKASKL PKKHPRCIAD GNELLRFYGT 300 TLACGLGMNG TCSLCESDKC CVCRIIRNGF TTKKELKGGI GVFTTSTSAR AYECIELSED 360 DPSLRKALTV CRVVAGRVHR PLENIQEMAG QTGFDSLAGK VGVYSNIEEL YLLNPRALLP 420 CFVVICKA

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKAGGGGGG GGSRSVCSRS  60
IANLKDVIHG SKRHLEKPPS CSPRSIGSSE FLNPITHEVI LSNSRCELKI TSFNGFQESS  120
PSSTFVGTLR PGTPGPGGNP TMHYFNSGCR NSVATPTRRS ASFLVDKEGS ANSFPCKNTR  180
HSLDNDVNGT SSGVTCHKCG EQFGKWEALE SHHLFKHAVS ELLEGDSSRK IVEIICRSSW  240
LKSESHVGRI ERILKVHNTQ KTLACFEEYR EMVKIKASKL PKKHPRCIAD GNELLRFYGT  300
TLACGLGMNG TCSLCESDKC CVCRIIRNGF TTKKELKGGI GVFTTSTSAR AYECIELSED  360
DPSLRKALTV CRVVAGRVHR PLENIQEMAG QTGFDSLAGK VGVYSNIEEL YLLNPRALLP  420
CFVVICKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016495917.1	0.0	PREDICTED: uncharacterized protein LOC107814927
TrEMBL	A0A1S4C434	0.0	A0A1S4C434_TOBAC; uncharacterized protein LOC107814927
STRING	XP_009776647.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-177	C2H2 family protein