PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03473g01018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 349aa    MW: 39772.9 Da    PI: 7.3427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03473g01018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS23.27.5e-0883134152
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaar 52 
                               l++ Ll  A+av++++   a + L +l +++s  gd++qR+aayf+ +L a 
  Niben101Scf03473g01018.1  83 LIHSLLISATAVDDNSIDSAIENLHELYQNVSLLGDSVQRVAAYFADGLIAS 134
                               57999999****************************************9765 PP
2GRAS101.21.5e-31137292223365
                      GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr. 306
                               +++++Lk v +l P +v++veqe   + ++Fl +f+e+l++++a+fdsl+  lp +s er ++E+  lg+ei+nv+  e+++++ 
  Niben101Scf03473g01018.1 137 KISHTLKEVHNLCPSIVTIVEQEGCKSPQNFLPKFMESLHHFAAMFDSLDDCLPIDSIERLNIEKNHLGKEIKNVLNYEKNNKFl 221
                               5789****************************************************************************99754 PP

                      GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve...........eesgslvlgWkdr 365
                                r e++ +W+ r+e+ GF  +pls+k+ +qaklll+  + s   +++           e++ ++ l W++r
  Niben101Scf03473g01018.1 222 SRYEQMDTWKGRMESHGFLGLPLSSKNIMQAKLLLKIRShSSPIQLDggnggfrifetEDQRAISLAWQHR 292
                               8**********************************876644333333443333333555566667888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.7091269IPR005202Transcription factor GRAS
PfamPF035142.6E-583134IPR005202Transcription factor GRAS
PfamPF035145.3E-29137292IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGDIVDQEEE LLCLRLAIVT NSCCERKKIK KRRELAFINT WDLNESNYCE GKIFNLLELR  60
ESMLKIDVKK KGSVVEDGKG LHLIHSLLIS ATAVDDNSID SAIENLHELY QNVSLLGDSV  120
QRVAAYFADG LIASYSKISH TLKEVHNLCP SIVTIVEQEG CKSPQNFLPK FMESLHHFAA  180
MFDSLDDCLP IDSIERLNIE KNHLGKEIKN VLNYEKNNKF LSRYEQMDTW KGRMESHGFL  240
GLPLSSKNIM QAKLLLKIRS HSSPIQLDGG NGGFRIFETE DQRAISLAWQ HRRDIIIIQK  300
IKESYVHSEM IFTLSFQRRI FILGSLVIRV LAPGASDMRR VWSTVIPGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-14139258232348Protein SCARECROW
5b3h_A2e-14139258231347Protein SCARECROW
5b3h_D2e-14139258231347Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224979.11e-107PREDICTED: scarecrow-like protein 21
TrEMBLA0A314KU171e-106A0A314KU17_NICAT; Protein scarecrow
STRINGXP_009620664.11e-104(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-21SCARECROW-like 21