PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03479g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 239aa    MW: 27270.4 Da    PI: 7.2015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03479g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12107148351
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  Niben101Scf03479g03001.1 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 148
                               79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-6106149IPR001471AP2/ERF domain
SMARTSM003807.6E-5106163IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-8107151IPR016177DNA-binding domain
CDDcd000182.28E-11108159No hitNo description
Gene3DG3DSA:3.30.730.107.9E-7109152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVSIRRRKLL GLCSGRSSFL VPLPKFSENG HIAENHFLNN KPTSVHPMPS TDIDESKERT  60
AVKIVPGSSN GHASGSLIEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGTQEEAA RLYDRAAFMC GREPNFEISE EEKQELSQFK WDEFLAFTRS  180
AITNKKTRRR SGVGARRKSE PLSSTLNSEE EDEDEDEEGE PESNSFSASE DIEQDVSLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461280.11e-152PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1S3Z9Z81e-150A0A1S3Z9Z8_TOBAC; ethylene-responsive transcription factor-like protein At4g13040
STRINGXP_009758059.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-47ERF family protein