PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03488g12001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 71aa MW: 8149.64 Da PI: 11.0634

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03488g12001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.2	6.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr+g+lKKA+ELS+LCda+vav++fs++g+ly++ss Niben101Scf03488g12001.1 9 KRIEDKSSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRGRLYDFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.59E-29	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.665	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.41E-34	2	60	No hit	No description
PRINTS	PR00404	6.7E-29	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MGRKKVEIKR IEDKSSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RGRLYDFSST 60 NRCAPFMLVN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	5e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795052.1	3e-36	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Refseq	XP_016435771.1	3e-36	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Swissprot	Q39295	3e-25	AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBL	A0A1S3X7B1	8e-35	A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
TrEMBL	A0A1U7XSL9	8e-35	A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1
STRING	XP_009795052.1	1e-35	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	1e-27	MIKC_MADS family protein