PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03502g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 120aa    MW: 13736.9 Da    PI: 9.2942
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03502g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.7e-17431033597
                               EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               +++l+++s rsW vk+++  +     lt+GWkeFv +n+Lk+gD++vF++++rs++ ++v +f
  Niben101Scf03502g01003.1  43 DVILQNSSTRSWAVKCSF--GTVNARLTSGWKEFVLDNNLKVGDVCVFERVNRSKRLFNVIIF 103
                               699*************66..333345***********************99987776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1910104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-1913104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-1516103No hitNo description
SMARTSM010191.3E-518106IPR003340B3 DNA binding domain
PfamPF023621.7E-1443103IPR003340B3 DNA binding domain
PROSITE profilePS5086312.77444106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MIIAYQRAKA YTSENPFFVC FMHPSYVSSA NRPIRLCYGL YSDVILQNSS TRSWAVKCSF  60
GTVNARLTSG WKEFVLDNNL KVGDVCVFER VNRSKRLFNV IIFTSAEVCK ELELARLHVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230753.13e-52PREDICTED: uncharacterized protein LOC109211655 isoform X1
RefseqXP_019230763.13e-52PREDICTED: uncharacterized protein LOC109211655 isoform X1
RefseqXP_019230770.13e-52PREDICTED: uncharacterized protein LOC109211655 isoform X1
RefseqXP_019230784.12e-52PREDICTED: uncharacterized protein LOC109211655 isoform X3
TrEMBLA0A1J6IMU62e-50A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1
TrEMBLA0A1J6INP27e-51A0A1J6INP2_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009613660.15e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-12B3 family protein