PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03502g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 583aa    MW: 65508.1 Da    PI: 8.3467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03502g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.9e-113073861297
                               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ++++ +++ kfa+++ ++k +   l+l  +   sW+vk+  + ++g   l   Wk+Fv +n+Lk gD++vF++++ s+  + v++
  Niben101Scf03502g01014.1 307 TRSIKSISLKFARKYFLEKYG--NLVLCVPGRGSWSVKC--TIGPGNAKLF--WKKFVLDNELKLGDVCVFEVIKGSKPLMDVTI 385
                               566789*********998777..5***************..8888887777..*******************9977655566666 PP

                               E CS
                        B3  97 f 97 
                               f
  Niben101Scf03502g01014.1 386 F 386
                               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-1452139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1454140IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01258141IPR003340B3 DNA binding domain
CDDcd100171.53E-860139No hitNo description
PROSITE profilePS508638.85465141IPR003340B3 DNA binding domain
SMARTSM010191.9E-6305389IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-13310389IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-14310389IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-8311386IPR003340B3 DNA binding domain
CDDcd100172.94E-14312387No hitNo description
PROSITE profilePS508638.36348389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAAKPQLQSG EGSSRWKSST AEIPQPKFFK IIFSQRECSR LLILKEQRTH DASILQDFLK  60
KKQRIPEHFA SRYCKNMLNP VYLEVPTREV WEVEVVLCQG QICLGSGWQD FHDFYSISCG  120
HFLMFGYNAR SHFNVTIFDL GASEIEYPYS SSQGIHTPIF HCHETRHASK RDQSESDDSV  180
EIPECIPRSH KAKAIIPDTV EHSVENLGHC PLGQSSKRKG QEGDAEHDVS VDVHVRRMKV  240
EKLQEDGTKL FIEVTIFPAA GEHTKHGEGT EIENSVEILD HCPSGHGSKR KGLEGDAEDD  300
VSAEIHTRSI KSISLKFARK YFLEKYGNLV LCVPGRGSWS VKCTIGPGNA KLFWKKFVLD  360
NELKLGDVCV FEVIKGSKPL MDVTIFPADG SIPMHKIARE ETGVSDGKNK IIDTDNFVPW  420
SQPKTVHSRK LKQRRGGSYG SGSNIKEENG ECAGIEHSVE ILGCYPLRKS SKRKRPEGET  480
QDAVSIDIHT KGINVENRQE DVASPSITRK TKRISDSKNK SIKTEKSVSC SQPKIVRSRK  540
LNLEKKQNRD SDGFTSKIKE EFNEDTGKHV QQSKSSCKGK DVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490738.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A1S4BPH50.0A0A1S4BPH5_TOBAC; putative B3 domain-containing protein Os03g0621600 isoform X1
STRINGXP_009613660.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein