PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03518g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 208aa MW: 22687.6 Da PI: 8.4015

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03518g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.5e-39	27	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+y+A ar+rdP+yG+v++i++lq Niben101Scf03518g00007.1 27 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYQALARIRDPIYGCVAHIFTLQ 111 7*********************9989***************************************************** PP DUF260 85 qqleqlkaelallkee 100 qq+ +l+aela+++++ Niben101Scf03518g00007.1 112 QQVVNLQAELAYVQAR 127 **********9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.583	26	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-37	27	125	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MNGGSCGGAD RQYNNNNNVV GAGGGGPCGA CKFLRRKCVR GCIFAPYFDS DQGTAHFAAV 60 HKVFGASNAS KLLLRIPAHK RLDAVVTLCY QALARIRDPI YGCVAHIFTL QQQVVNLQAE 120 LAYVQARLST LQPRSPNTLT GLQSSSDIFC TASTISSSSN NMEYPQFDIT AGLSDSFDDQ 180 ERENFELHTL ARELVFRHLP GVRFRPSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-37	23	121	7	104	LOB family transfactor Ramosa2.1
5ly0_B	5e-37	23	121	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803301.1	1e-126	PREDICTED: LOB domain-containing protein 19-like
Swissprot	O81322	1e-65	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A1U7YMT4	1e-125	A0A1U7YMT4_NICSY; LOB domain-containing protein 19-like
STRING	XP_009803301.1	1e-126	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	9e-66	LOB domain-containing protein 31