PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03518g05008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 321aa MW: 37468.4 Da PI: 4.5838

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03518g05008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.3	4e-36	11	103	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k ye++ede++++lisw+++ n f+++d +f++++LpkyFkhsnf+SFvRQLn+YgF+k+ +++ weF+++sF Niben101Scf03518g05008.1 11 FLLKCYEMVEDESTDSLISWDQSDNYFIIWDVPKFSSQLLPKYFKHSNFSSFVRQLNIYGFHKTVTDR---------WEFANDSF 86 9******************999*************************************999.........**** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 kg+k+ll++i r+k++ Niben101Scf03518g05008.1 87 LKGQKHLLKNIVRRKQS 103 ***********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.7E-53	7	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.0E-36	7	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-32	7	100	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.0E-18	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-30	11	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-18	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-18	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVKSFENVAP FLLKCYEMVE DESTDSLISW DQSDNYFIIW DVPKFSSQLL PKYFKHSNFS 60 SFVRQLNIYG FHKTVTDRWE FANDSFLKGQ KHLLKNIVRR KQSSVVQKKS SHQVEIKSCK 120 SEENKYLGLW EEVENLKIDK NVLTEELVKL RQQQQNSESK LILLREQLKG MEKHQQQMLS 180 FIVMAMQSPN FLVQFFQPKE NNLRVSENGN NILSEVEDYS EHMPSDRAIV RYHPPTHEAA 240 EPLSAELETA VDTQKPMELD LSCDEIKDLF SNIDFFSGLM DEKLLSFENS GPLTLPDLPD 300 DEDMLEQLLL SQPITENKED E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-24	7	105	16	124	Heat shock factor protein 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770996.1	0.0	PREDICTED: heat stress transcription factor A-8
Refseq	XP_016505243.1	0.0	PREDICTED: heat stress transcription factor A-8
Refseq	XP_019260655.1	0.0	PREDICTED: heat stress transcription factor A-8
TrEMBL	A0A1S4CVV8	0.0	A0A1S4CVV8_TOBAC; heat stress transcription factor A-8
TrEMBL	A0A1U7W1C2	0.0	A0A1U7W1C2_NICSY; heat stress transcription factor A-8
TrEMBL	A0A314LB77	0.0	A0A314LB77_NICAT; Heat stress transcription factor a-8
STRING	XP_009770996.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12235	22	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	5e-77	heat shock transcription factor A8