PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03530g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 554aa    MW: 61699.2 Da    PI: 5.2553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03530g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS32.89.1e-11120177155
                      GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar 55 
                               lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+++  +
  Niben101Scf03530g00001.1 120 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGfTNMERLAAHFTDALSRTNXE 177
                               68***********85554449*******************************987665 PP
2GRAS325.79.2e-10018454815374
                      GRAS  15 gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                               ++ ela+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s+s  +k++ +p+ ++e+++ ++laa++l++++sP++kf+h
  Niben101Scf03530g00001.1 184 KSRELARVILVRLKELASPNGfTNMERLAAHFTDALQALLDGaaSGSLHAKSMfSPNYKDEQQQGDVLAAFQLLQDMSPFVKFGH 268
                               56789***********************************994333333344447777888889********************* PP

                      GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                               +taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g pf
  Niben101Scf03530g00001.1 269 FTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVHETGRRLTAFAASIGQPF 353
                               *****************************************776556*********888899999******************** PP

                      GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerfle 259
                               +f+    ++ e++++++L++ +gEa+++n++l+l ++  +  ++     ++L+  k l+P++v++ve+e+    ++e F+ rf++
  Niben101Scf03530g00001.1 354 SFHHCRLDSDETFKPSALKLVRGEAIIINCMLHLPHFIYRASDSV---ASFLSESKILNPRLVTLVEEEVRPiwEEEGFVGRFMD 435
                               ****9999****************************995555544...49*******************997789********** PP

                      GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                                l++ysal+dslea++p +s++r+ vEr++lg++i   +a   + r e+++   +W e+l+++G+++ ++s  + +qaklll  +
  Niben101Scf03530g00001.1 436 ILHHYSALYDSLEAGFPLQSRARALVERVFLGPRIIGSLARIYRTRGEDER--CSWGEWLSAVGYRESNISFANHCQAKLLLGLF 518
                               *********************************************988877..89****************************** PP

                      GRAS 345 ksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                               + dgyrvee   + l+lgWk+r+L+s+S W+
  Niben101Scf03530g00001.1 519 N-DGYRVEEIgTNKLILGWKSRRLLSASIWT 548
                               *.******97589999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.66294528IPR005202Transcription factor GRAS
PfamPF035143.1E-8120177IPR005202Transcription factor GRAS
PfamPF035143.2E-97184548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MMMVDDTIPD FDYYGGLSTP TTTTTTTTTT TTTTSSSDDD HDPGCTWNDW SPVVDWDAFS  60
GGDNFQDLIE FMIEGNNSSG GLNMDIPKST TFYNTEDSML MEESEESNNN QSEDVNGLKL  120
VHLLMAAAEA LTGVNKSREL ARVILVRLKE LASPNGFTNM ERLAAHFTDA LSRTNXEALT  180
GVNKSRELAR VILVRLKELA SPNGFTNMER LAAHFTDALQ ALLDGAASGS LHAKSMFSPN  240
YKDEQQQGDV LAAFQLLQDM SPFVKFGHFT ANQAILEAVA HDRRVHIVDY DIMEGIQWAS  300
LMQALVSRKD GPPTPHLRIT ALSRSGSGRR SFGTVHETGR RLTAFAASIG QPFSFHHCRL  360
DSDETFKPSA LKLVRGEAII INCMLHLPHF IYRASDSVAS FLSESKILNP RLVTLVEEEV  420
RPIWEEEGFV GRFMDILHHY SALYDSLEAG FPLQSRARAL VERVFLGPRI IGSLARIYRT  480
RGEDERCSWG EWLSAVGYRE SNISFANHCQ AKLLLGLFND GYRVEEIGTN KLILGWKSRR  540
LLSASIWTTS DSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5518754835378Protein SCARECROW
5b3h_D2e-5518754835378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799696.10.0PREDICTED: nodulation-signaling pathway 2 protein
RefseqXP_016459047.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1S3Z4C00.0A0A1S3Z4C0_TOBAC; nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U7YCK80.0A0A1U7YCK8_NICSY; nodulation-signaling pathway 2 protein
STRINGXP_009799696.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-146GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]