PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03548g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 254aa MW: 28910.1 Da PI: 4.8587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03548g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.1	1.2e-23	33	126	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt+qe+l+Lie+++ eer rg+ + +p+W +vs+++r++g +r+p+qC+++w+n+ +++kik++e++ + s+ Niben101Scf03548g02003.1 33 RWTRQETLVLIEGKKIAEERTHRGRksssvfgsdKPEPKWNSVSSYCRQHGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSE 117 8************999999887555677777799****************************************9866666 PP trihelix 77 stcpyfdql 85 s + + ++l Niben101Scf03548g02003.1 118 SYWIMSNDL 126 777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.282	26	99	IPR017877	Myb-like domain
SuperFamily	SSF46689	8.58E-5	31	104	IPR009057	Homeodomain-like
Pfam	PF13837	4.9E-13	32	122	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-6	32	100	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MNENTTSLPD LVDGQQKPTE DTDDKSNTPR HSRWTRQETL VLIEGKKIAE ERTHRGRKSS 60 SVFGSDKPEP KWNSVSSYCR QHGANRGPVQ CRKRWSNMIS DFRKIKAWES QTNGSSESYW 120 IMSNDLRREK KLPGFFDREV YDVLDGKEFT ADAYQLALVT ITTDDKVDYG IETAEEEEEE 180 EDEQENTEAE AVSHTDGYIM SEDVMFPAME EIGSNPLKEG IAKDKKAKSI PSPTPISGKL 240 RCPSKLALLY TRTC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773262.1	1e-156	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_016502485.1	1e-156	PREDICTED: trihelix transcription factor ASR3-like
Refseq	XP_016504881.1	1e-156	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-58	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A1S4CN58	1e-154	A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like
TrEMBL	A0A1S4CUT0	1e-154	A0A1S4CUT0_TOBAC; trihelix transcription factor ASR3-like
TrEMBL	A0A1U7VZR6	1e-154	A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009773262.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-60	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]