PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03550g00018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 484aa MW: 54110.1 Da PI: 4.5273

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03550g00018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30.3	9.2e-10	181	208	28	55
G2-like 28 tPktilelmkvkgLtlehvkSHLQkYRl 55 Pk+ilelm+ +gLt+ +v+SHLQk R Niben101Scf03550g00018.1 181 YPKEILELMDEPGLTRMQVASHLQKCRN 208 5************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-9	180	208	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-8	182	209	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MSQQEINNQS NEGLVNAMAP YNGMINEVHV MLVYHGQETI QEMVDLLESH KYKVVCDDNN 60 PLLAKNAFDV GAYLYLNKPL QEEMVKYLWQ FVLKEKLQRE KVIKVLENGE NMIINIGDED 120 ETGENVDDEQ GEKSIANDEE QNNNNEVESS ESNGKYKLRK KRGKKSTKEA NQGDNHSSGC 180 YPKEILELMD EPGLTRMQVA SHLQKCRNNN WRAPEERKSS RNSSGQGSSS GSQQQSGHRK 240 FGSMPRIQPN IFTNLQQQHD QEINQRSPPE FQFPPLNNSS IIARGESSTQ HEQAYRPQLP 300 YVEPQYLSIG SPFNNPNFIQ NNAGGFVQQQ QQNGPFVGMG GREQGPIIGG TNYRPGFRIN 360 NGSDQHAQNG YNMNVNAAHL GYSGGPVISD MNENVTINVM GFAAAANANF QQQYGQPNMA 420 EPSNFVAPSN VSDSEGTDSN DGQNCDQYFD FNDVDYLFQN LGPPTSNLPN EQGTEFGPVY 480 SDDQ

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MSQQEINNQS NEGLVNAMAP YNGMINEVHV MLVYHGQETI QEMVDLLESH KYKVVCDDNN  60
PLLAKNAFDV GAYLYLNKPL QEEMVKYLWQ FVLKEKLQRE KVIKVLENGE NMIINIGDED  120
ETGENVDDEQ GEKSIANDEE QNNNNEVESS ESNGKYKLRK KRGKKSTKEA NQGDNHSSGC  180
YPKEILELMD EPGLTRMQVA SHLQKCRNNN WRAPEERKSS RNSSGQGSSS GSQQQSGHRK  240
FGSMPRIQPN IFTNLQQQHD QEINQRSPPE FQFPPLNNSS IIARGESSTQ HEQAYRPQLP  300
YVEPQYLSIG SPFNNPNFIQ NNAGGFVQQQ QQNGPFVGMG GREQGPIIGG TNYRPGFRIN  360
NGSDQHAQNG YNMNVNAAHL GYSGGPVISD MNENVTINVM GFAAAANANF QQQYGQPNMA  420
EPSNFVAPSN VSDSEGTDSN DGQNCDQYFD FNDVDYLFQN LGPPTSNLPN EQGTEFGPVY  480
SDDQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595754.2	0.0	PREDICTED: two-component response regulator ORR21-like
TrEMBL	A0A1J6J4W6	0.0	A0A1J6J4W6_NICAT; Two-component response regulator arr1
STRING	XP_009798262.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA813	23	84