PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03577g01023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 417aa    MW: 46330.4 Da    PI: 6.5355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03577g01023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-062973361255
                               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf03577g01023.1 297 RREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 336
                               9*****************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-12273350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.681285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-5291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-7297340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEKGNLFTND GNTTMGNYGI GIQENEQLQN CFFNPNWENS DPFESALSSM VSSPNANIPN  60
GSTNNSSGEN FVLRELIGRL GSICSSRELS PNSNMINSST NNSCYSTPLN SPPKLNLSMR  120
GNLSHNQLPQ FSADPGFAER AARFSCFANK TFKSFNEAEL LQHNRQIIAQ PNLESGKLSR  180
VSSNQCIEVS SGSQIQEFKD VNLVPKNSEF GDSRENSSVS EQIPVGENDT ISRKRKSISK  240
GKSKNANVLL EKNESNAKRS KSEENNGNDK AKEEEKAAKK EEEKAVPEPP KDYIHVRREK  300
ISERMKLLQD LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE MFQSRGSLAQ NMYSSETSAQ  360
AFPYGFQSQP GQNFHKGTEF PFPINSLNNN LARNSNMQLP SLDGYVEPTP QVINNFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788675.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1U7XQA20.0A0A1U7XQA2_NICSY; transcription factor bHLH62-like
STRINGXP_009788675.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-48bHLH family protein