PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03580g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 198aa    MW: 21334.9 Da    PI: 4.9882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03580g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-182879155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                              + y+G+r++k++g+Wv+eIr+p     r   r++lg+f tae+Aa a++ a+ +l+g
  Niben101Scf03580g01003.1 28 PVYRGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTAEMAAVAYDVAAIALKG 79
                              68*******************9.....4489**********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-112879IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-282989IPR001471AP2/ERF domain
SMARTSM003802.2E-322993IPR001471AP2/ERF domain
PROSITE profilePS5103222.3262987IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-192989IPR016177DNA-binding domain
PRINTSPR003672.0E-53041IPR001471AP2/ERF domain
CDDcd000181.67E-283089No hitNo description
PRINTSPR003672.0E-55369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MATYGGSSTT IGGSNSVTVP HSYSGRHPVY RGIRRRKSSG KWVSEIREPR SPNRIWLGTF  60
PTAEMAAVAY DVAAIALKGP DTDLNFPNSA ASLPVPATSS PRDIQAAATS AAAAVGAAGD  120
ALLARREVHD QKSKLVFENL GFENNYEFMD EDLIFDMPNV LVNMAEGMLL SPPRFNLPDD  180
DIAAAAEYTA SQNLWNYP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234502.11e-121PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1J6KVB51e-119A0A1J6KVB5_NICAT; Ethylene-responsive transcription factor erf024
STRINGXP_009793202.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-45ERF family protein