PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03628g12006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 122aa    MW: 13466.7 Da    PI: 8.7861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03628g12006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-141965354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              ++h+e+ErrRR+riN  +++L+ l+P        K++Ka+ L k++ +Ik+L
  Niben101Scf03628g12006.1 19 KNHSEAERRRRERINGHLATLKNLVPGT-----NKMDKAALLAKVISHIKDL 65
                              58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8661665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-121965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-152066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-152067IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-132271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-52966No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVRPGEKGVN PEKALIALKN HSEAERRRRE RINGHLATLK NLVPGTNKMD KAALLAKVIS  60
HIKDLRVNAA EGVLVPTDID EDVSNNKQSD LAEPLILSKH LCAVNISMSL FLICDNLWIL  120
SP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ERRRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786357.12e-40PREDICTED: transcription factor bHLH30-like
RefseqXP_016493130.12e-40PREDICTED: transcription factor bHLH30-like
RefseqXP_019250543.12e-40PREDICTED: transcription factor bHLH30-like
SwissprotQ9XEF06e-15BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A1J6I9V85e-39A0A1J6I9V8_NICAT; Transcription factor bhlh30
TrEMBLA0A1S4BW815e-39A0A1S4BW81_TOBAC; transcription factor bHLH30-like
TrEMBLA0A1U7X2H75e-39A0A1U7X2H7_NICSY; transcription factor bHLH30-like
STRINGXP_009786357.18e-40(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-17bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]