PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03643g04007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 243aa    MW: 27588.1 Da    PI: 4.5393
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03643g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.31.4e-45599397
                     NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89
                              e+ +++Pianv+rimk++lP  akisk+aket+qecvsef+sfvt+easd c++e+r+t+ngdd++wal++lGf++y+e +  yl k
  Niben101Scf03643g04007.1  5 EHVKLVPIANVGRIMKQILPPTAKISKEAKETIQECVSEFVSFVTGEASDMCRKENRRTVNGDDICWALSSLGFDNYAEVMLRYLYK 91
                              566899********************************************************************************* PP

                     NF-YB 90 yrelegek 97
                               re+e+++
  Niben101Scf03643g04007.1 92 LREFERQR 99
                              *****986 PP
2NF-YB145.31.4e-45117211397
                     NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                               e+ +++Pianv+rimk++lP  akisk+aket+qecvsef+sfvt+easd c++e+r+t+ngdd++wal++lGf++y+e +  yl
  Niben101Scf03643g04007.1 117 EHVKLVPIANVGRIMKQILPPTAKISKEAKETIQECVSEFVSFVTGEASDMCRKENRRTVNGDDICWALSSLGFDNYAEVMLRYL 201
                               566899******************************************************************************* PP

                     NF-YB  88 kkyrelegek 97 
                                k re+e+++
  Niben101Scf03643g04007.1 202 YKLREFERQR 211
                               *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-425111IPR009072Histone-fold
PfamPF008085.1E-251073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.66E-3410111IPR009072Histone-fold
PRINTSPR006151.0E-143755No hitNo description
PRINTSPR006151.0E-145674No hitNo description
PRINTSPR006151.0E-147593No hitNo description
Gene3DG3DSA:1.10.20.105.0E-44112233IPR009072Histone-fold
SuperFamilySSF471134.5E-34122223IPR009072Histone-fold
PfamPF008085.1E-25122185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVDEHVKLV PIANVGRIMK QILPPTAKIS KEAKETIQEC VSEFVSFVTG EASDMCRKEN  60
RRTVNGDDIC WALSSLGFDN YAEVMLRYLY KLREFERQRA NQTTGSNDEQ DTMDVDEHVK  120
LVPIANVGRI MKQILPPTAK ISKEAKETIQ ECVSEFVSFV TGEASDMCRK ENRRTVNGDD  180
ICWALSSLGF DNYAEVMLRY LYKLREFERQ RANQTTGSND EQDTVEVASE AENQEIISTP  240
PAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-343206192Transcription factor HapC (Eurofung)
4g92_B2e-343206192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233101.12e-81PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040271e-46NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0E0CCP21e-80A0A0E0CCP2_9ORYZ; Uncharacterized protein
STRINGOMERI01G39560.14e-81(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.14e-49nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]