PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03657g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 163aa    MW: 18086.9 Da    PI: 4.7835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03657g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.7e-14251356
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                              y+ Vr  + +gr++Ae++dp     + +r++lg+f+tae+ a+a++ a+++++g+
  Niben101Scf03657g02001.1  2 YRVVRKQP-WGRFAAEVQDPI----KkARVWLGTFDTAEDVARAYDDAARAFHGA 51
                              899**999.*******99962....35************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-25164IPR001471AP2/ERF domain
PROSITE profilePS5103219.994158IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-16258IPR016177DNA-binding domain
CDDcd000181.20E-17257No hitNo description
PRINTSPR003671.6E-8213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-26257IPR001471AP2/ERF domain
PfamPF008471.1E-7350IPR001471AP2/ERF domain
PRINTSPR003671.6E-82440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MYRVVRKQPW GRFAAEVQDP IKKARVWLGT FDTAEDVARA YDDAARAFHG AKAKTNFLVF  60
PPYGQNQFEN FNRPASSSLS STGESSSGAR DFHSRVELTS RITPSAVECY SDCDSSSTVV  120
DDNIDGDSSA FCKRPLPFDL NLLPPSDDVD DVHVTPCVFS YFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17257662ATERF1
3gcc_A4e-17257662ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767438.14e-82PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767439.14e-82PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767440.14e-82PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503257.14e-82PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503258.14e-82PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503259.14e-82PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLA0A1U7VYH41e-80A0A1U7VYH4_NICSY; ethylene-responsive transcription factor 3-like
TrEMBLR4WAQ51e-80R4WAQ5_TOBAC; Ethylene response factor #44
STRINGXP_009767438.12e-81(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-18ethylene responsive element binding factor 4