PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03670g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 247aa    MW: 27308.2 Da    PI: 10.0424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03670g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-114792454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              +h ++Er+RR+riN+ +++L++l P++     +K +K+ +L++Av  +k+L
  Niben101Scf03670g02006.1 47 THAMAERKRRQRINTHLHTLKKLFPHL-----PKKDKSRVLTEAVTQLKEL 92
                              8*************************8.....699**********999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1334101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4844392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-94697No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1147103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-94792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-84998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.4E-6145211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLSSLQGCNG FLQGANSVQF LHERNSNVVD EYGKSTRKNK SKDAALTHAM AERKRRQRIN  60
THLHTLKKLF PHLPKKDKSR VLTEAVTQLK ELRKKVAQQM ETQKDSEGNY NGNSGLSSFF  120
LPGENDEVLV YYSKESESDD RTVKATVCCD DRPGLNRDLS VAVQLVQGRV IKAEMATVGG  180
RTKAEMVVVL CKVGGGEEDI AQLRRALKSV VENRALGLGS SLNLGRRLGD NKWACFGGLN  240
LSACKWA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265405.11e-160PREDICTED: putative transcription factor bHLH107
TrEMBLA0A314L2641e-159A0A314L264_NICAT; Transcription factor bhlh30
STRINGXP_009779545.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-24bHLH family protein