PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03689g01013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 269aa MW: 30132.7 Da PI: 5.3903

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03689g01013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	89	149	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e+++ l +++e++V++WFqNrRa+ k+ Niben101Scf03689g01013.1 89 RQRWTPTPMQLQILERIFDQgNGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRARSKR 149 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.6e-33	89	151	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+aR+++kq Niben101Scf03689g01013.1 89 RQRWTPTPMQLQILERIFDQGNGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQ 151 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.997	85	150	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-18	85	155	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-14	87	154	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-19	87	154	IPR009057	Homeodomain-like
Pfam	PF00046	2.4E-19	89	149	IPR001356	Homeobox domain
CDD	cd00086	4.99E-14	89	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEWEKQQQPP QTAEELEGGG GGGGMFVKVM TDEQMEVLRK QIAVYATICE QLVDLHKSMA 60 SQHDLAGVRL GNLYCDPLVT SAGHKITGRQ RWTPTPMQLQ ILERIFDQGN GTPSKQKIKE 120 ITSDLSQHGQ ISETNVYNWF QNRRARSKRK QQVATTNNTE SEVETEVESP NEKKTRPEDL 180 QPPHMPTSRA EDVGYQNPEV SSGMHSLDPL SSKPEPVFPS EGTSKPAGSY GEMSFYGMSN 240 PRMDQLMGKM EVPGSYHPYL HAEDYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777417.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Refseq	XP_016442227.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-89	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S3XRB3	0.0	A0A1S3XRB3_TOBAC; WOX13b
TrEMBL	A0A1U7WBQ3	0.0	A0A1U7WBQ3_NICSY; WUSCHEL-related homeobox 8-like
STRING	XP_009777417.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-83	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]