PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03690g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 91aa    MW: 10331.7 Da    PI: 5.9087
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03690g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09653347
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               WT++  +++ +a + + ++   +W+  a+ +g g+t++++k ++ k+
  Niben101Scf03690g00017.1  6 TWTPQQNKKFENALAIYDKDtpdRWRNLAKAVGGGKTEEDVKIHYEKL 53
                              7********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539154IPR017877Myb-like domain
SMARTSM007173.7E-7356IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-12562IPR009057Homeodomain-like
PfamPF002497.6E-7653IPR001005SANT/Myb domain
CDDcd001672.89E-5654No hitNo description
Gene3DG3DSA:1.10.10.601.4E-4660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASNSTWTPQ QNKKFENALA IYDKDTPDRW RNLAKAVGGG KTEEDVKIHY EKLVEDIKRI  60
ESGQAEVSQA PIEARIGKVT KQMEPIIYVE V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-21264667RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586717.15e-41PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1732e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6KYD41e-39A0A1J6KYD4_NICAT; Protein radialis-like 2
TrEMBLA0A1S4B6C61e-39A0A1S4B6C6_TOBAC; protein RADIALIS-like 5
STRINGXP_009586717.12e-40(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-25RAD-like 6