PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03702g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 200aa    MW: 20989.8 Da    PI: 9.8428
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03702g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-10104129227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+lC+ f     Ck+Gd+C+FaHg+
  Niben101Scf03702g02001.1 104 KTRLCNKFNTAEGCKFGDKCNFAHGE 129
                               8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6763765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-73962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-14100134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8101133IPR000571Zinc finger, CCCH-type
SMARTSM003560.001102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882102130IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7104129IPR000571Zinc finger, CCCH-type
PROSITE profilePS500849.666173200IPR004088K Homology domain, type 1
CDDcd001050.00138175199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEFGGDRKRG RPHGPMNGHG TFKKSKQELE SIPTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VTQMLGSNPA LPAASRNSIA PMSFPDGSSP PAVKTRLCNK FNTAEGCKFG  120
DKCNFAHGEW ELGKPMAPLH EESRGMFQTH GWYGSRPETT PAGFGAAASF GSSATAKISV  180
DASLAGPIIG KGGVNSKQIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250893.11e-142PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-61C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6JCB21e-141A0A1J6JCB2_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009803026.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-32C3H family protein