PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03705g02012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 155aa MW: 17276.2 Da PI: 7.0028

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03705g02012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.2	3.6e-10	107	143	1	37
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37 +fY+eYAk++GFs +++s++s++++++++++fvCs+ Niben101Scf03705g02012.1 107 SFYKEYAKSIGFSSIIKASRRSRTSRKFIDAKFVCSR 143 5**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-8	107	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MNGRVSGTRL TTWIGGTHLT SMVIDLEHPS GDQHKEKEDC GHHICGATAT ASKSVCLDRG 60 NAGTSWNEGT SNGTYVLSNV DSLAVNCYRD LEPRDGMEFD SKEDAFSFYK EYAKSIGFSS 120 IIKASRRSRT SRKFIDAKFV CSRDLDIYWA CNQTW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772379.1	1e-87	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X8
Refseq	XP_009772385.1	1e-87	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X9
Refseq	XP_009772389.1	1e-87	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X10
Refseq	XP_009772395.1	1e-87	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X11
TrEMBL	A0A1U7WCJ8	3e-86	A0A1U7WCJ8_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X8
TrEMBL	A0A1U7WCK8	3e-86	A0A1U7WCK8_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X10
TrEMBL	A0A1U7WDT4	2e-86	A0A1U7WDT4_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X9
TrEMBL	A0A1U7WDU5	3e-86	A0A1U7WDU5_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X11
STRING	XP_009772328.1	1e-86	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-20	FAR1-related sequence 1