PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03739g05005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 249aa MW: 28830.9 Da PI: 5.0958

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03739g05005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	30.5	7.2e-10	98	151	9	59
EEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 9 KYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 K G K +g r Y+rC+++ +C+++k+v++ +e+p + ++tY g+H+++ Niben101Scf03739g05005.1 98 KQGGKGRRGCYKRRCYFRCAHKydqDCRATKQVQTIQENPIIYQTTYFGQHTCN 151 6688888999999******99999************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	10.097	85	153	IPR003657	WRKY domain
SMART	SM00774	2.7E-9	95	152	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.2E-10	98	152	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-11	98	151	IPR003657	WRKY domain
Pfam	PF03106	2.9E-10	98	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MKKRLVHQNP RKNRVIKELV EGKRSTTQLQ TLLQQPIADH GYSVSADELL LKIWRSFNEA 60 ITELNTWGLA FQIEEVDQPD SGDLKSNDST SELKKNDKQG GKGRRGCYKR RCYFRCAHKY 120 DQDCRATKQV QTIQENPIIY QTTYFGQHTC NSVKIPKHEM ESSSFEVKQI LPSSDTIDSS 180 LDSTVKEEEQ ESKVQSDESS TMDSNLWQEF AHDSIMADHS SYFERVISSD MEDFDKFSDF 240 HFDEAIEFS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250\|UniProtKB:Q9LY00, ECO:0000250\|UniProtKB:Q9SUP6, ECO:0000269\|PubMed:21898085}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269\|PubMed:21898085}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601871.1	1e-141	PREDICTED: probable WRKY transcription factor 70
Swissprot	K4BIZ9	2e-62	WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBL	A0A1S3ZRA7	1e-133	A0A1S3ZRA7_TOBAC; probable WRKY transcription factor 70
STRING	XP_009601871.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6199	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66600.1	2e-12	ABA overly sensitive mutant 3

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]