PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03751g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 231aa MW: 26396.2 Da PI: 9.8001

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03751g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.8	3.3e-17	98	151	9	57
HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 9 keqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++q+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Niben101Scf03751g00003.1 98 SSQIGILEMLYRGgMRTPNAHQIEQITEQLgkygKIEGKNVFYWFQNHKARERQ 151 68********99************************************97 PP
2	Wus_type_Homeobox	98.8	4.1e-32	98	153	10	65
Wus_type_Homeobox 10 peQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++Qi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Niben101Scf03751g00003.1 98 SSQIGILEMLYRGGMRTPNAHQIEQITEQLGKYGKIEGKNVFYWFQNHKARERQKQ 153 57****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.1E-4	84	156	IPR001356	Homeobox domain
CDD	cd00086	0.00153	88	153	No hit	No description
Pfam	PF00046	6.1E-15	98	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.82E-10	98	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-6	98	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.523	100	152	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MLLPVVIALL YNGGSSIFKT PNPPMYMGMK VHQFTRGLML EHDSAAPSLT LGCKRLRPLA 60 PKLSSCTNHP TIHVKSFIRP ESSTSSAKTS FNDDKKDSSQ IGILEMLYRG GMRTPNAHQI 120 EQITEQLGKY GKIEGKNVFY WFQNHKARER QKQKRNSLGL SPSPRTPPPI VTSPLSFDTR 180 GEVVRGEDSP YKRKCRDWTY EYLEEEEKRN CREDNGDRTL ELFPLHPEGM R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488708.1	1e-135	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	9e-54	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1S4BIK0	1e-134	A0A1S4BIK0_TOBAC; WUSCHEL-related homeobox 4-like
STRING	XP_009776871.1	1e-130	(Nicotiana sylvestris)
STRING	XP_009613514.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	4e-56	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]