PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03756g01007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 23579.4 Da PI: 7.7182

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03756g01007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94	6.8e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++ Niben101Scf03756g01007.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59 79***********************************************86 PP
2	K-box	18.9	6.2e-08	102	131	70	99
K-box 70 nellleqieelqkkekelqeenkaLrkkle 99 n+l++e+i+elqkk k+lqe+n++L+kk++ Niben101Scf03756g01007.1 102 NQLMHESISELQKKDKALQEQNNQLSKKVM 131 89**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.226	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-30	2	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.49E-40	2	76	No hit	No description
PRINTS	PR00404	2.6E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD 60 SWILERYERY SYAERQLVAN TDHSSPGSWT LEHAKLKARI ENQLMHESIS ELQKKDKALQ 120 EQNNQLSKKV MQMEKELAQQ NQWEQQNQEV NSSSFVLQQQ LDSPNLGEAY QSTAEENGEV 180 EGASNSQQQT ANTVMPPWMI RHLNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-21	1	71	1	73	MEF2 CHIMERA
6byy_B	4e-21	1	71	1	73	MEF2 CHIMERA
6byy_C	4e-21	1	71	1	73	MEF2 CHIMERA
6byy_D	4e-21	1	71	1	73	MEF2 CHIMERA
6bz1_A	4e-21	1	71	1	73	MEF2 CHIMERA
6bz1_B	4e-21	1	71	1	73	MEF2 CHIMERA
6bz1_C	4e-21	1	71	1	73	MEF2 CHIMERA
6bz1_D	4e-21	1	71	1	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019236550.1	1e-122	PREDICTED: agamous-like MADS-box protein AGL8 homolog
Swissprot	Q42429	1e-113	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A1J6K131	1e-120	A0A1J6K131_NICAT; Agamous-like mads-box protein agl8
STRING	XP_009603844.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	8e-66	AGAMOUS-like 8

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]