PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03824g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 162aa MW: 19288.1 Da PI: 10.1192

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03824g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	7.8e-07	86	132	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + Er RR++ ++++ L ++lP +K +K +i++ A I++Lq Niben101Scf03824g02004.1 86 KHMIKERIRREKQKQSYLDLHKVLPME-----TKGEKNAIVQTAASRIQELQ 132 68999*******************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-11	78	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.94E-5	80	133	No hit	No description
PROSITE profile	PS50888	10.379	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	86	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEEFFQVQTL QTNNGEILWF ENEAFLMNQS AFLSFRNQST EGFGVSGYGN VSANHRNMKK 60 KMMEFLKKSW SPKIGEVKME REKVHKHMIK ERIRREKQKQ SYLDLHKVLP METKGEKNAI 120 VQTAASRIQE LQKYKESLKE RNDELEMDLA EDKRRNLRLK SE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253619.1	1e-96	PREDICTED: transcription factor bHLH92
TrEMBL	Q0KK48	1e-96	Q0KK48_TOBAC; Basic helix-loop-helix protein
STRING	XP_009767584.1	2e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-23	bHLH family protein