PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03831g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 78aa    MW: 8964.2 Da    PI: 6.7991
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03831g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind33.61.2e-10262958
                 GAGA_bind  9 rnkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........m 58
                              rn+gyyep+  lk +lglqlmss+ +rd k+   r +n  + + ++ +++rd          +
  Niben101Scf03831g00002.1  2 RNWGYYEPS--LKGHLGLQLMSSVVDRDMKPfltRRENPIMLGANGLYHSRDsivpeaplshI 62
                              9******99..**********************9777887************66666555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.5E-9165IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MRNWGYYEPS LKGHLGLQLM SSVVDRDMKP FLTRRENPIM LGANGLYHSR DSIVPEAPLS  60
HIDYVNTRIS QDTINMES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312761.19e-40protein BASIC PENTACYSTEINE2-like
RefseqXP_009608500.19e-40PREDICTED: protein BASIC PENTACYSTEINE2
RefseqXP_009762917.18e-40PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_016470419.18e-40PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_019266465.18e-40PREDICTED: protein BASIC PENTACYSTEINE2
SwissprotQ9SKD02e-15BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A1J6IMN72e-38A0A1J6IMN7_NICAT; Protein basic pentacysteine2
TrEMBLA0A1S4A1E52e-38A0A1S4A1E5_TOBAC; protein BASIC PENTACYSTEINE2-like
TrEMBLA0A1U7V3X92e-38A0A1U7V3X9_NICSY; protein BASIC PENTACYSTEINE2-like
TrEMBLH1ZN832e-38H1ZN83_TOBAC; GAGA-binding transcriptional activator
STRINGXP_009762917.13e-39(Nicotiana sylvestris)
STRINGXP_009608500.13e-39(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.27e-18basic pentacysteine1