PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03839g12004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 294aa MW: 32351.7 Da PI: 9.0595

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03839g12004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.8e-40	53	152	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++rr+Ca+dC+lapyfpae++k+f n+hklFG+sn+lk+lk++p+ ++++am++l++eA++ra+dPv G+++vi++l++ Niben101Scf03839g12004.1 53 ACAACKYQRRRCAPDCPLAPYFPAERQKDFLNAHKLFGVSNILKVLKNVPPFQKDNAMKALIFEANIRADDPVGGCHRVIQNLHR 137 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q++ +a+l+l+ ++ Niben101Scf03839g12004.1 138 QINIYQAQLQLVYHQ 152 ********99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.076	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-38	53	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTNVVNNTQN ISSSATTSAV TTSTGVRSNP KNITRVASRG GDSSGRGANG SQACAACKYQ 60 RRRCAPDCPL APYFPAERQK DFLNAHKLFG VSNILKVLKN VPPFQKDNAM KALIFEANIR 120 ADDPVGGCHR VIQNLHRQIN IYQAQLQLVY HQIVRVQEAA IQEQQNFNTM TSVRGIDSNL 180 NFDMLPLHGL HGFNRSDFIC LGEAGSSSQI VKGKGVERIN NVEEFEVKTM MTHSNGKQPL 240 VESEDIKPYI KPYFGSIHTS KGKGVATELS QDTRMLSCEE PNVLNVAMLT SINL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-28	54	155	12	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-28	54	155	12	113	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785905.1	1e-162	PREDICTED: uncharacterized protein LOC104234106
TrEMBL	A0A1U7XHF7	1e-161	A0A1U7XHF7_NICSY; uncharacterized protein LOC104234106
STRING	XP_009785905.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14294	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-40	LOB domain-containing protein 22