PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03850g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 309aa    MW: 35081.7 Da    PI: 6.842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03850g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.78.6e-22134194259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgy+W KYGqK+  g+++prsYY+C+++   +C++ k+++rs++dp v++it +g H+++
  Niben101Scf03850g00006.1 134 DDGYSWGKYGQKNTFGAKYPRSYYKCAYRykqNCEAAKHIQRSDDDPYVFKITCKGYHTCQ 194
                               8**************************99999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-22124195IPR003657WRKY domain
PROSITE profilePS5081119.325128191IPR003657WRKY domain
SuperFamilySSF1182909.15E-21131195IPR003657WRKY domain
SMARTSM007743.0E-26133195IPR003657WRKY domain
PfamPF031066.2E-20134194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFSINPKYN SLINELTQGM EHTKQLRAYL RTVASTSETT QEVLLQKIHS SYEQSLLILK  60
WSGSTSQSSL PLPSTIDAIE SPVFFDGSPT SYDMKRSFIH HPELIDNSKR SKSEHIWTEE  120
VRVSAESGSA GPIDDGYSWG KYGQKNTFGA KYPRSYYKCA YRYKQNCEAA KHIQRSDDDP  180
YVFKITCKGY HTCQQATTSM LQPTFSLTDR NQHFQNDKLV GSSFVSPTTP ESNYYSVSNN  240
SQMNGFGIVH NLQHSESYLS DTGIFLNLHH SDSDRTDIFS VNTSTTSSIG AEFHFSIWTK  300
TTNTRQRDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15133194869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628594.10.0PREDICTED: probable WRKY transcription factor 53 isoform X1
TrEMBLA0A1S3YNK80.0A0A1S3YNK8_TOBAC; probable WRKY transcription factor 53 isoform X1
STRINGXP_009628594.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.16e-39WRKY family protein