PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03852g00024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 540aa    MW: 60015.4 Da    PI: 8.4082
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03852g00024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-16741135
                      GATA  1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35
                              C +Cg+t+TplWR+gp d+++ LCnaCG ++r kg+
  Niben101Scf03852g00024.1  7 CYHCGVTSTPLWRNGPpDKPI-LCNACGSRWRTKGT 41
                              ****************77777.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11545No hitNo description
CDDcd002023.70E-16654No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.8E-14741IPR000679Zinc finger, GATA-type
PfamPF139193.8E-9282376IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPDKPILCN ACGSRWRTKG TLANYTPLHA RAAPDDLKDY  60
RVSRVKHMSL KNKETKLLKR KQNHDNTEVR TPPDYNQVFL KGLDEDTSNR SSSGSAISNT  120
ESCAQFGSTE ASDLTGHAQS NIWDTTVPSR KRTCISRPKQ SSVEKLTKDL YTILHEQQSS  180
CFSGSSEEDL LFASDKSMVS VEIGHGSVLI RHPNSIGRDE ESEVSSLSVD NKRHYVNEAY  240
SLFSTPPVYI NKGVYLPNLG TERIKKPTSQ GMEQDKIKRD KDQLEKLQIL GQHNSPLCHI  300
DLKDVLNYEE FVRHFSSDEQ QQLQKYLAPV DSLAPPDSLK SMFASSHFEE NLSSFQKLLA  360
EGVFDNSLGV KIEDSRTLKR LILCYLTKSK WVEKYNLLKD TKCKSSTRGS EVAGGPNAIG  420
TGHSMNVKRP LEGHHAKHAG AKKEMKSPNR VVMRSSYEQK ELIDNNSSCF SPKSLFALPC  480
NSSPMLNSLH FANGSSDEEL LLDVPSNSSF PQAELLVPTS SFAAQASTSS SSVYPHVVRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626897.10.0PREDICTED: GATA transcription factor 26
RefseqXP_016462025.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-150GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S3ZC440.0A0A1S3ZC44_TOBAC; GATA transcription factor 26-like
STRINGXP_009626897.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-153GATA transcription factor 26