PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03856g06015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 229aa    MW: 25749.4 Da    PI: 9.7309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03856g06015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-055372221
                              EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                              +C++Cgk F +k +L  H+r
  Niben101Scf03856g06015.1 53 TCSICGKKFASKKSLFGHMR 72
                              7******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.81E-65077No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.9E-45274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7625279IPR007087Zinc finger, C2H2
PfamPF139121.9E-65476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVDNQEPRSI FKGGGTGTLW VKLKIPKEEQ KKQQEVDILR KKKMGRNQRP PITCSICGKK  60
FASKKSLFGH MRCHPDRDWR GIHPPPTDLG GWSVTAKRGR RTNSSSEEEQ LRVGVHYLML  120
LAHGHSLKDT AKLETTNSNF KTADEEEETH ICRPIKRRMK KLKDLGSIQD VSIYNSTVIS  180
TNNIATAMDD HEPLLSSSKF WILISMNCPF LPEDDVEAAA TASNHGSIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157RPIKRR
2155163KRRMKKLKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764490.11e-93PREDICTED: zinc finger protein 225-like
RefseqXP_016482947.11e-93PREDICTED: zinc finger protein 225-like
RefseqXP_019248442.13e-93PREDICTED: uncharacterized protein LOC109227700
TrEMBLA0A1J6IBC48e-92A0A1J6IBC4_NICAT; Uncharacterized protein
TrEMBLA0A1S4B1Z53e-92A0A1S4B1Z5_TOBAC; zinc finger protein 225-like
TrEMBLA0A1U7VRH43e-92A0A1U7VRH4_NICSY; zinc finger protein 225-like
STRINGXP_009764490.15e-93(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-13C2H2-like zinc finger protein