PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03864g02014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 396aa MW: 44328.3 Da PI: 7.0543

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03864g02014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.6	2.2e-32	43	147	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v Niben101Scf03864g02014.1 43 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVS 127 89*************************966778999******************************************* PP EEE-.SS.SEE..EEEEE-S CS B3 82 Fkld.gr.sefelvvkvfrk 99 F++ g+ + +l++ ++r+ Niben101Scf03864g02014.1 128 FQRGvGElGKDRLFIDWRRR 147 666999999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-42	34	152	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-30	40	148	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.05E-27	41	130	No hit	No description
Pfam	PF02362	7.3E-30	43	147	IPR003340	B3 DNA binding domain
SMART	SM01019	8.1E-24	43	148	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.875	43	148	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MMDTSPTANH CEIDVDEHHQ NLVDLGVGAS ANSMALIERE HMFDKVVTPS DVGKLNRLVI 60 PKQHAEKYFP LDSSTNEKGL LLNFEDRNGK SWRFRYSYWN SSQSYVMTKG WSRFVKEKKL 120 DAGDIVSFQR GVGELGKDRL FIDWRRRPDA PTDHLHTHFM THVPLSHHFS NNFQYRSNIN 180 HQYPAAWNQP LFLQPDHSPL HSRHAGSMSH QQQYSYSAYG IRNSPNYYDT ASNFNNMASS 240 RIVVNGNPCP SGSVVYLRSG SVAQVPQQEV GLMKQMQRGS SSSSIVGEGG GKLVEPMVFD 300 SVPVVQGKAA PKRLRLFGVN MDCTVSDSDE SCDMSSSSSS LPTATYSHTH QFSTSTPSLQ 360 FRTLHNYDDA KPLQTAPADE ESSAKGKESM SLDLEI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MMDTSPTANH CEIDVDEHHQ NLVDLGVGAS ANSMALIERE HMFDKVVTPS DVGKLNRLVI  60
PKQHAEKYFP LDSSTNEKGL LLNFEDRNGK SWRFRYSYWN SSQSYVMTKG WSRFVKEKKL  120
DAGDIVSFQR GVGELGKDRL FIDWRRRPDA PTDHLHTHFM THVPLSHHFS NNFQYRSNIN  180
HQYPAAWNQP LFLQPDHSPL HSRHAGSMSH QQQYSYSAYG IRNSPNYYDT ASNFNNMASS  240
RIVVNGNPCP SGSVVYLRSG SVAQVPQQEV GLMKQMQRGS SSSSIVGEGG GKLVEPMVFD  300
SVPVVQGKAA PKRLRLFGVN MDCTVSDSDE SCDMSSSSSS LPTATYSHTH QFSTSTPSLQ  360
FRTLHNYDDA KPLQTAPADE ESSAKGKESM SLDLEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	9e-68	36	148	1	114	B3 domain-containing transcription factor NGA1
5os9_B	9e-68	36	148	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016496640.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBL	W6HWN6	0.0	W6HWN6_NICBE; NGATHAa
STRING	XP_009758550.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2817	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	7e-73	B3 family protein

Publications ? help Back to Top
Fourquin C,Ferr The essential role of NGATHA genes in style and stigma specification is widely conserved across eudicots. New Phytol., 2014. 202(3): p. 1001-13 [PMID:24483275]