PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03867g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 224aa MW: 24587.4 Da PI: 10.8851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03867g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00089	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C k Fs+ L H+ +H Niben101Scf03867g02006.1 18 YRCDNCRKLFSSCQALAGHQHLH 40 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.86E-5	17	43	No hit	No description
PROSITE profile	PS50157	10.284	18	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	40	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MANELNNNTP SQGPIVVYRC DNCRKLFSSC QALAGHQHLH KVQGTWVKGH HHKFLLPPHY 60 LPDLSRFIAR NNKSITVRNG GRGKPQTVFE PQPMVQEPLA VAPALATSLL AQALVPAPVG 120 PRRAPIIRPR GRPRSIIRSQ PMVQVPLAVS PAPATPLLVQ DPDPIAHLEN QLALFQSRLN 180 YFKGVGDRRG ESTHSSTGST SITIAAEKTN GKKKVEELDL ELRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019239377.1	6e-91	PREDICTED: predicted GPI-anchored protein 58
TrEMBL	A0A1J6J8R9	1e-89	A0A1J6J8R9_NICAT; Uncharacterized protein
STRING	XP_009619950.1	7e-47	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21