PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03868g01013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 246aa MW: 27520.4 Da PI: 7.1664

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03868g01013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92	7e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ Niben101Scf03868g01013.1 4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLM 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 ++++ +q+++e +l + Niben101Scf03868g01013.1 89 CSGNWTRCQEAVESVLKG 106 ********99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.143	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH 60 LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSTII QVPINKDNNT 120 DNQESLQIMP LKGCDIRHIS KNNSTDHIHQ VVKTRNRFKR KAKVETTASE YMINEPGPLK 180 FSITGWDFDH HMEEEDELKR APSHDSFSVE TVEPSLVNRV ETVLPVKLEE DGDVGLELTL 240 GLLSPA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777707.1	1e-177	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	2e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U7WCJ6	1e-176	A0A1U7WCJ6_NICSY; LOB domain-containing protein 40-like
STRING	XP_009777707.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-73	LOB domain-containing protein 41