PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03873g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 110aa    MW: 12758 Da    PI: 9.6588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03873g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-1033863996
                              EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3 39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                               +   ++W++ + y++++ +  +++ Wk+Fv++n+Lk+gD +vF+l++ s+ + ++kv
  Niben101Scf03873g00018.1 33 LTCGRKKWDMFY-YSNYD-K--FSAEWKKFVDDNDLKVGDGLVFELSQCSTNKIHFKV 86
                              4456799**999.55554.4..6788*******************9865666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.193192IPR003340B3 DNA binding domain
CDDcd100173.47E-12290No hitNo description
SuperFamilySSF1019362.75E-13290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-11290IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0019392IPR003340B3 DNA binding domain
PfamPF023625.0E-81485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MIVTKTTVKP FYGMYLPRKM NKELPAAGAP AVLTCGRKKW DMFYYSNYDK FSAEWKKFVD  60
DNDLKVGDGL VFELSQCSTN KIHFKVQILR GDFPSELLPE MKRVQLMPPQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230315.11e-68PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A314KJF13e-67A0A314KJF1_NICAT; B3 domain-containing protein
STRINGXP_009786634.17e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-08B3 family protein