PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03885g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 468aa    MW: 52077.8 Da    PI: 6.9762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03885g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.11.5e-35481931128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                               lp+G++F+Ptd+el+ e+L++kv +k+      ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+
  Niben101Scf03885g02001.1  48 LPAGVKFDPTDQELI-EHLEAKVLAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTKDGLSRHFFHRPSKAYTTGTRKRRK 130
                               799************.99****999996665443333333666646**********.555667799******************8 PP

                       NAM  78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Niben101Scf03885g02001.1 131 iqtecqdlqaaGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193
                               6777777765433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-3844212IPR003441NAC domain
PROSITE profilePS5100533.74848212IPR003441NAC domain
PfamPF023655.0E-1649193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKSDWVGLPA GVKFDPTDQE  60
LIEHLEAKVL AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTKDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECQDLQA AGGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW SNTTTSTTAG GEASSDLNSR  240
RDSGSGSCSS SKDINNNIPS SHRDELSAAV CAAMSSYTTM DIQQFKPEHF IFLPFRKSFD  300
EAGTVVGEAS IAREGGSAAA AVPVGTSDAR DIHEPHHVTH DQQLHQHQHQ HHHQVATASY  360
HISRPSPPIS TIITPPPLHN TSIILGHDDA FHVPRSIILP NENFQQQQQQ QQHHKVEGRS  420
ASELEQLIMG CTSTDIKGDQ SSITNPQDAD WLKYSHFWPD PDNPDHHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-134619313140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245876.10.0PREDICTED: uncharacterized protein LOC109225605 isoform X2
SwissprotQ9M0F81e-180NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1J6J8M30.0A0A1J6J8M3_NICAT; Nac domain-containing protein 73
TrEMBLA0A1U7XTH60.0A0A1U7XTH6_NICSY; NAC domain-containing protein 4-like isoform X3
STRINGXP_009790203.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-164NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]