PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03908g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29179.2 Da    PI: 5.8884
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03908g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k ien  nrqvtfskRr+g+lKKA+ELSvLCdaevaviifsst kl+e+ss
  Niben101Scf03908g02005.1  9 KLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTSKLFEFSS 59
                              569**********************************************96 PP
2K-box51.54.4e-1897176988
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                               l+++ +++ ++e++ Lk+e+++L+ +q +llG+dL+ L l eL+ Le+qL+++l  i+++K+ell++q+e+++++ +el+
  Niben101Scf03908g02005.1  97 LQTHMQKQEEKEVDSLKDELSKLKIKQMRLLGKDLNGLGLSELRLLEHQLNEGLLAIKDRKEELLIQQLENSRRQVEELR 176
                               56666778899***************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
CDDcd002651.10E-39275No hitNo description
SuperFamilySSF554556.41E-32273IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-1398175IPR002487Transcription factor, K-box
PROSITE profilePS5129710.394102187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KANELSVLCD AEVAVIIFSS TSKLFEFSST  60
SMKQTLSRYN RCVASIEISA IESKSEDNKQ PQPQAQLQTH MQKQEEKEVD SLKDELSKLK  120
IKQMRLLGKD LNGLGLSELR LLEHQLNEGL LAIKDRKEEL LIQQLENSRR QVEELRGLFP  180
LSACLPPPYL EYHPLEKKYP IIKEGEESLD SDTACEDGVD DEDSNTTLQL GLPTIGRKRK  240
KPEQESPSSN SENQIGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22169169MEF2C
5f28_B5e-22169169MEF2C
5f28_C5e-22169169MEF2C
5f28_D5e-22169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236240RKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (2,4-D). Feedback loop leading to direct down-regulation by itself. {ECO:0000269|PubMed:15686521}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787834.11e-178PREDICTED: agamous-like MADS-box protein AGL15
RefseqXP_016490205.11e-178PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ388472e-62AGL15_ARATH; Agamous-like MADS-box protein AGL15
TrEMBLA0A1S4BMX11e-176A0A1S4BMX1_TOBAC; agamous-like MADS-box protein AGL15
TrEMBLA0A1U7XLK31e-176A0A1U7XLK3_NICSY; agamous-like MADS-box protein AGL15
STRINGXP_009787834.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-49AGAMOUS-like 15
Publications ? help Back to Top
  1. Zheng Q,Zheng Y,Perry SE
    Decreased GmAGL15 expression and reduced ethylene synthesis may contribute to reduced somatic embryogenesis in a poorly embryogenic cultivar of Glycine max.
    Plant Signal Behav, 2014.
    [PMID:23838957]
  2. Perry SE,Zheng Q,Zheng Y
    Transcriptome analysis indicates that GmAGAMOUS-Like 15 may enhance somatic embryogenesis by promoting a dedifferentiated state.
    Plant Signal Behav, 2016. 11(7): p. e1197463
    [PMID:27302197]
  3. Cosio C, et al.
    The class III peroxidase PRX17 is a direct target of the MADS-box transcription factor AGAMOUS-LIKE15 (AGL15) and participates in lignified tissue formation.
    New Phytol., 2017. 213(1): p. 250-263
    [PMID:27513887]
  4. Zheng Q,Zheng Y,Ji H,Burnie W,Perry SE
    Gene Regulation by the AGL15 Transcription Factor Reveals Hormone Interactions in Somatic Embryogenesis.
    Plant Physiol., 2016. 172(4): p. 2374-2387
    [PMID:27794101]
  5. Chen N,Veerappan V,Abdelmageed H,Kang M,Allen RD
    HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 600-619
    [PMID:29475938]