PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03911g05003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 964aa MW: 107962 Da PI: 6.1206

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03911g05003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.6	5.6e-54	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 +e + rwlk+ e++ iL n+e+h+l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYa Niben101Scf03911g05003.1 13 REaQIRWLKPAEVLFILRNHEHHQLSNEPAQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYA 97 55589****************************************************************************** PP CG-1 87 hseenptfqrrcywlLeeelekivlvhyle 116 h+e+np+fqrr+yw+L+ +e+ivlvhy++ Niben101Scf03911g05003.1 98 HGEQNPNFQRRSYWMLDPVYEHIVLVHYRD 127 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.552	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-74	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.8E-47	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.0E-9	391	479	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.56E-18	395	479	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.5E-9	395	478	IPR002909	IPT domain
CDD	cd00102	2.15E-5	395	479	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.0E-13	593	688	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.973	594	686	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.77E-14	597	688	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.84E-12	614	686	No hit	No description
Pfam	PF12796	3.6E-6	615	687	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0056	627	656	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.114	627	659	IPR002110	Ankyrin repeat
SMART	SM00015	15	744	766	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.62	745	774	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.11E-5	796	851	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	17	803	825	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.437	804	833	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.028	807	824	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0056	826	848	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.791	828	852	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.0E-5	829	848	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MAESGYDIND LVREAQIRWL KPAEVLFILR NHEHHQLSNE PAQKPPSGSL FLFNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPVYEHI 120 VLVHYRDITE GRQNPAFMSE SSPISSTFSP SPSSYSTQQT GSTVIAGESY EQYQNQSSPG 180 EICSDAVINN NRTSDITGRT NEVMSSPGLE MSQALRRLEE QLSLNDDCFK EIDPLYADAI 240 SDDSSLVEMQ GNSNSLLLQH HSAESSESHH QHLAQDGHIW KDMLDHYGVS TAAESLNKYL 300 PKLDENGMLQ ISSERGAIEA YQSYKWPNFS ETEAQKATIP AFKPLEDFKY SSYCPGVTAF 360 GSNSDQCTTI FDQDQIGTSL EDEMSLTISQ KQKFTIRDIS PDWGYSSEAT KVVIIGSFLC 420 NPSECMWTCM FGDTEVPIQI IQEGVICCQA PPRLPGKVTL CVTSGNRESC SEVKEFEYRV 480 KPDDCARNNR SAVEGAYKST EELLLLVRFV QMLLLDLSVH KEDSSELSND LLEKSKANED 540 SWSQVIESLL FGTSTSTITI DWLLEELLKD KFQQLLSYKL QRKDNQMGCS LSKKEQGIIH 600 MVSGLGFEWA LHPILNAGVS VDFRDINGWT ALHWAARFGR EQMVASLIAS GASAGAVTDP 660 SPRDPVGKTA ASIASSCGHK GLAGYLSEVA LTSHLSSLTL VESELSKGTA DVEAEKTISS 720 ISNTSSTTNE DQRSLKDSLA AVRNAAQAAA RIQSAFRAHS FRKRQQRESA VATTACGDEY 780 GFLSNDIHGL SAASKWAFRN TRDYNTAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG 840 YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDAESV DESEDEDILK VFRKQKVDAA 900 LDEAVSRVLS MVESPGARRQ YHRILEKYRQ AKAELEGAES ETASTAHGDM SNMENDDIYQ 960 FPSY

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MAESGYDIND LVREAQIRWL KPAEVLFILR NHEHHQLSNE PAQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPVYEHI  120
VLVHYRDITE GRQNPAFMSE SSPISSTFSP SPSSYSTQQT GSTVIAGESY EQYQNQSSPG  180
EICSDAVINN NRTSDITGRT NEVMSSPGLE MSQALRRLEE QLSLNDDCFK EIDPLYADAI  240
SDDSSLVEMQ GNSNSLLLQH HSAESSESHH QHLAQDGHIW KDMLDHYGVS TAAESLNKYL  300
PKLDENGMLQ ISSERGAIEA YQSYKWPNFS ETEAQKATIP AFKPLEDFKY SSYCPGVTAF  360
GSNSDQCTTI FDQDQIGTSL EDEMSLTISQ KQKFTIRDIS PDWGYSSEAT KVVIIGSFLC  420
NPSECMWTCM FGDTEVPIQI IQEGVICCQA PPRLPGKVTL CVTSGNRESC SEVKEFEYRV  480
KPDDCARNNR SAVEGAYKST EELLLLVRFV QMLLLDLSVH KEDSSELSND LLEKSKANED  540
SWSQVIESLL FGTSTSTITI DWLLEELLKD KFQQLLSYKL QRKDNQMGCS LSKKEQGIIH  600
MVSGLGFEWA LHPILNAGVS VDFRDINGWT ALHWAARFGR EQMVASLIAS GASAGAVTDP  660
SPRDPVGKTA ASIASSCGHK GLAGYLSEVA LTSHLSSLTL VESELSKGTA DVEAEKTISS  720
ISNTSSTTNE DQRSLKDSLA AVRNAAQAAA RIQSAFRAHS FRKRQQRESA VATTACGDEY  780
GFLSNDIHGL SAASKWAFRN TRDYNTAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG  840
YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDAESV DESEDEDILK VFRKQKVDAA  900
LDEAVSRVLS MVESPGARRQ YHRILEKYRQ AKAELEGAES ETASTAHGDM SNMENDDIYQ  960
FPSY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781561.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A1U7WW76	0.0	A0A1U7WW76_NICSY; Calmodulin-binding transcription activator 4
STRING	XP_009781561.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]