PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03915g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 172aa    MW: 20625.2 Da    PI: 4.546
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03915g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.72.7e-20210417128
                       NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 
                               +yLk kv+g ++ l+  i+ +d   ++P+++++k+  ++++wyfFs+         ++nrat++gyWk+   +++++    +++ 
  Niben101Scf03915g02001.1   2 YYLKSKVAGLSFYLSINIPYIDFSFSDPSEINEKALWSKNQWYFFSQV--------KENRATRKGYWKEVHMNEPIILGnfGEKM 78 
                               8**********999888**************977777899*****997........45899***************998888999 PP

                       NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                               vg+kk +v+y+ +    ++t+W+m+e++l
  Niben101Scf03915g02001.1  79 VGIKKYFVYYNID---EVQTNWIMEEFHL 104
                               **********544...467********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.5821131IPR003441NAC domain
SuperFamilySSF1019417.19E-251129IPR003441NAC domain
PfamPF023654.1E-142104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MYYLKSKVAG LSFYLSINIP YIDFSFSDPS EINEKALWSK NQWYFFSQVK ENRATRKGYW  60
KEVHMNEPII LGNFGEKMVG IKKYFVYYNI DEVQTNWIME EFHLSISNSF KKPSKKRENE  120
MEWVLCRVHE SNNQTQGINW LYRNCDDEVE LSALDEVFLS MDDDEEEEIS FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-15313634170NO APICAL MERISTEM PROTEIN
1ut4_B5e-15313634170NO APICAL MERISTEM PROTEIN
1ut7_A5e-15313634170NO APICAL MERISTEM PROTEIN
1ut7_B5e-15313634170NO APICAL MERISTEM PROTEIN
3swm_A5e-15313637173NAC domain-containing protein 19
3swm_B5e-15313637173NAC domain-containing protein 19
3swm_C5e-15313637173NAC domain-containing protein 19
3swm_D5e-15313637173NAC domain-containing protein 19
3swp_A5e-15313637173NAC domain-containing protein 19
3swp_B5e-15313637173NAC domain-containing protein 19
3swp_C5e-15313637173NAC domain-containing protein 19
3swp_D5e-15313637173NAC domain-containing protein 19
4dul_A5e-15313634170NAC domain-containing protein 19
4dul_B5e-15313634170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246639.11e-111PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1S4CZF91e-108A0A1S4CZF9_TOBAC; NAC domain-containing protein 104-like
STRINGXP_009792377.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-29xylem NAC domain 1