PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03930g05036.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 263aa    MW: 29465.6 Da    PI: 9.5671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03930g05036.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-087091425
                              ---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                              ++C  f r G C+yGd C++aH
  Niben101Scf03930g05036.1 70 PPCLQFKRWGSCSYGDECRYAH 91
                              89******************** PP
2zf-CCCH19.61.6e-06109132225
                               -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                               k + C+ff  +  C++G++C+F H
  Niben101Scf03930g05036.1 109 KVKSCHFFDSGKGCPFGNKCHFLH 132
                               6778**999999************ PP
3zf-CCCH34.73.1e-11172197227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+ C ++ rtG C yG++C+FaHg+
  Niben101Scf03930g05036.1 172 KTKFCVNWERTGSCAYGSKCQFAHGK 197
                               566699******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9956694IPR000571Zinc finger, CCCH-type
SMARTSM003560.00336793IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-67091IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-67191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-7106134IPR000571Zinc finger, CCCH-type
SMARTSM003560.0059107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6107135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291107135IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4109132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-15167201IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342170198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-9170201IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8175197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSMPANSFGI SCKRDEHFST HWPQSNTNGK KYGFNCNAEC QAFKRPRMMN SKMGPEDNRS  60
NMAMNLGPQP PCLQFKRWGS CSYGDECRYA HITGPLKSNR VEDQRNLSKV KSCHFFDSGK  120
GCPFGNKCHF LHERNQKLEG GLGFCRVSSA ISIATSGRGH KRSVELRKEL LKTKFCVNWE  180
RTGSCAYGSK CQFAHGKAEL QTLGSSNTLE PLGTSGICAP AKTGACKCRF LFKWTNVQKI  240
SQIYADWIER VQLVPLSSHT VEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243857.11e-173PREDICTED: zinc finger CCCH domain-containing protein 37-like
TrEMBLA0A1J6IK271e-172A0A1J6IK27_NICAT; Zinc finger ccch domain-containing protein 39
STRINGXP_009770534.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-21C3H family protein