PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03944g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 208aa    MW: 24057.8 Da    PI: 4.8429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03944g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS159.72.5e-492206167374
                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                               +fA++l+++f+fn+++++++ +l+ e ++++ +E++a+ +++ l+r+l+++ +le     +++++k ++P+ ++vve ea+hns+
  Niben101Scf03944g02008.1   2 SFAKSLNLSFSFNIVLVENIMELKQEYFEIDDEEVVAIFVQYFLMRMLARPDKLEA----LMRVIKVINPRAMIVVEVEANHNSP 82 
                               69**********************************************88888888....************************* PP

                      GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                F++rf+e+l +y a+fd+le  + ++++ r+  E e l++ i+ +va+eg+er+ rh +   Wr+ + + G+++v+ls++   q
  Niben101Scf03944g02008.1  83 VFVDRFVETLLFYGAFFDALEDCMKHDEKSRTATESEHLNQGIRIIVAAEGEERTIRHVKIDVWRMFFARYGMEEVELSKSSLYQ 167
                               ************************************************************************************* PP

                      GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               a+l+l+++  +   + e ++++l++gWk+ pL s+SaW+
  Niben101Scf03944g02008.1 168 ANLVLKNFVcGSCSTQEMNQNCLLIGWKGTPLNSLSAWT 206
                               *********8887888899*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.9821185IPR005202Transcription factor GRAS
PfamPF035148.6E-472206IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSFAKSLNLS FSFNIVLVEN IMELKQEYFE IDDEEVVAIF VQYFLMRMLA RPDKLEALMR  60
VIKVINPRAM IVVEVEANHN SPVFVDRFVE TLLFYGAFFD ALEDCMKHDE KSRTATESEH  120
LNQGIRIIVA AEGEERTIRH VKIDVWRMFF ARYGMEEVEL SKSSLYQANL VLKNFVCGSC  180
STQEMNQNCL LIGWKGTPLN SLSAWTFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-203205170374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800222.11e-137PREDICTED: DELLA protein RGL1-like
RefseqXP_016458635.11e-137PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3Z2I11e-136A0A1S3Z2I1_TOBAC; DELLA protein RGL1-like
TrEMBLA0A1U7Y7W41e-136A0A1U7Y7W4_NICSY; DELLA protein RGL1-like
STRINGXP_009800222.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1904823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-40RGA-like 2